Q. What files do I need to copy off the cd, Currantly I copied just the 2 files in the base folder and put them indo my jk2 folder on my server.
  A. assets0.pk3 assets1.pk3 assets2.pk3 ( u get assets2.pk3 from ur windows client installation of JK2 < this file just came with jk2 1.03 patch > )  
 Q. What permissions do I need to set up on my jk2 files and folders. 
 A. nothing really exepct chmod +x jk2ded and brandelf -t Linux jk2ded  
 Q. Where do I get the Config files for the jk2, I dont see them on the cd. 
 A. this is what i have so far for my 12player public FFA server. 
 //////////////////////////
 // Server Information //
 ////////////////////////// 
 seta g_motd "
WwW.FeedTheNeed.NET) <-- GO THERE NOW AND REGISTER !"
 seta sv_hostname "Vancouver.BC FeedTheNeed.NET"
 seta Administrator "WiLDCaRD"
 seta Email "[Redacted]@[Redacted].[Redacted]"
 seta url "
WwW.FeedTheNeed.NET")
 seta Location "Canada" 
 //////////////////////////
 // Server Configuration //
 //////////////////////////
 seta g_weaponDisable "65531"
 seta g_needpass "0"
 seta sv_privatePassword ""
 seta rconpassword "urpassword"
 seta sv_maxclients "12"
 seta sv_minclients "0"
 seta sv_privateClients "0"
 seta sv_maxRate "25000"
 seta sv_maxping "200"
 seta g_ghostRespawn "3"
 seta g_forcerespawn "0"
 seta g_inactivity "300"
 seta g_warmup "0"
 seta sv_pure "1"
 seta sv_master1 "masterjk2.ravensoft.com"
 seta g_allowvote "0"
 seta cl_allowDownload "1"
 seta g_friendlyfire "0"
 seta g_teamForceBalance "1"
 seta g_teamAutoJoin "1"
 seta sv_floodProtect "1" 
 //Enable IP banning
 set g_filterban "1"
 seta g_banIPs "65.107.31.180" 
 //seta g_gravity 800 
 //////////////////////////
 // Game Settings //
 //////////////////////////  
 //Free For All is gametype 0
 //Holocron FFA is gametype 1
 //Jedi Master is gametype 2
 //Duel is gametype 3
 //Team FFA is gametype 5 
 //CTF is gametype 6
 //CT Ysalamiri is gametype 7  
 seta fraglimit "30" 
 seta timelimit "20" 
 seta capturelimit "10"
 seta g_weaponrespawn "1" 
 seta g_adaptrespawn "1" 
 seta sv_cheats "0"
 seta g_logSync "0"
 seta g_log "games.log" 
 seta g_gametype "0"
 seta g_timeouttospec "70" 
 seta g_statLog "0"
 seta g_teamForceBalance "0" 
 seta g_teamAutoJoin "1" 
 seta g_friendlySaber "0"
 seta g_friendlyFire "0"
 seta g_saberInterpolate "1"
 seta g_forcePowerDisable "16345"
 // seta g_forcePowerDisable "32767"
 seta g_spawnInvulnerability "1"
 seta g_forceRegenTime "300"
 seta g_autoMapCycle "1" 
 seta g_maxGameClients "0"
 seta ui_gametype "1"
 seta ui_forcePowerDisable "1"
 seta ui_freeSaber "1" 
 seta ui_rankChange "0"
 seta ui_opponentName "Rebellion"
 seta ui_teamName "Empire"
 seta ui_ctf_friendly "0"
 seta ui_ctf_timelimit "20"
 seta ui_ctf_capturelimit "8"
 seta ui_team_friendly "0"
 seta ui_team_timelimit "20"
 seta ui_team_fraglimit "0"
 seta ui_tourney_timelimit "15"
 seta ui_tourney_fraglimit "50"
 seta ui_ffa_timelimit "20" 
 seta ui_ffa_fraglimit "20" 
 seta g_blueTeam "Rebellion"
 seta g_redTeam "Empire"
 seta sv_minPing "0"
 seta sv_maxRate "30000"
 seta g_duelWeaponDisable "65531"
 seta g_forceBasedTeams "0"
 seta duel_fraglimit "1"
 seta g_maxForceRank "4" 
 seta g_saberLocking "1"
 seta g_privateDuel "1"
 seta timelimit "20"
 seta fraglimit "0"
 //////////////////////////
 // MODE Settings //
 ////////////////////////// 
 // Duel Maps rotationcycle 
 // set d1 "map duel_carbon ; set nextmap vstr d2"
 // set d2 "map duel_bay ; set nextmap vstr d3"
 // set d3 "map duel_jedi ; set nextmap vstr d4"
 // set d4 "map duel_pit ; set nextmap vstr d1"
 // vstr d1 
 // CTF Maps rotationcycle 
 // set d1 "map ctf_ns_streets ; set nextmap vstr d2"
 // set d2 "map ctf_imperial ; set nextmap vstr d3"
 // set d3 "map ctf_bespin ; set nextmap vstr d4"
 // set d4 "map ctf_Yavin ; set nextmap vstr d1"
 // vstr d1
 set d1 "map ffa_yavin ; set nextmap vstr d2"
 set d2 "map ffa_bespin ; set nextmap vstr d3"
 set d3 "map ctf_yavin ; set nextmap vstr d1"
 vstr d1 
 Q. Any other things that I need to know about JK2 and freebsd. 
 A. not really other then the fact that u should screen to background ur server.